Provides code for FEM, optic flow and generating kymographs as shown in paper:
Condensation of the Drosophila nerve cord is oscillatory and depends on coordinated mechanical interactions
Katerina Karkali 1, Prabhat Tiwari 2, Anand Singh 2, 11, Sham Tlili 2, 12, Ignasi Jorba 3, 4, 5, Daniel Navajas 3, 4, 5, José J.Muñoz 6, 7, 8, Timothy E.Saunders 2, 9, 10, Enrique Martin-Blanco 1, 13
https://www.sciencedirect.com/science/article/pii/S1534580722001678#ack0010
If you have any questions. test data sets are provided (test sets should be unzipped prior to use).
Data for the codes can be found at https://www.dropbox.com/sh/xz8dcoxmlgz0hum/AAAwIL_FqNL1aERiUJssnfXOa?dl=0.
- Sham Tlili krystalysham@gmail.com
- Timothy Saunders timothy.saunders@warwick.ac.uk
- Jose Munoz j.munoz@upc.edu
1 : Instituto de Biología Molecular de Barcelona, Consejo Superior de Investigaciones Científicas, Barcelona, Spain
2 : Mechanobiology Institute, National University of Singapore, Singapore, Singapore
3 : Institute for Bioengineering of Catalonia, Barcelona, Spain
4 : CIBER de Enfermedades Respiratorias (CIBERES), Madrid, Spain
5 : Facultat de Medicina i Ciencies de la Salut, Universitat de Barcelona, Barcelona, Spain
6 : Laboratori de Càlcul Numèric (LaCàN), Universitat Politècnica de Catalunya, Barcelona, Spain
7 : Centre Internacional de Mètodes Numèrics en Enginyeria (CIMNE), 08034 Barcelona, Spain
8 : Institut de Matemàtiques de la Universitat Politècnica de Catalunya-BarcelonaTech (IMTech), Barcelona, Spain
9 : Institute of Molecular and Cell Biology, A∗STAR, Singapore, Singapore
10 : Warwick Medical School, University of Warwick, Coventry, UK