Tgnink

bottosson.github.io

colorpicker

picker color of pixels in screen

SpatialEmbeddings

Instance Segmentation by Jointly Optimizing Spatial Embeddings and Clustering Bandwidth

CVPR2024-Paper-Code-Interpretation

cvpr2024/cvpr2023/cvpr2022/cvpr2021/cvpr2020/cvpr2019/cvpr2018/cvpr2017 论文/代码/解读/直播合集，极市团队整理

paintera

napari-clusters-plotter

A napari plugin for clustering objects according to their properties.

instance_segmentation_with_pixel_embeddings

Instance segmentation via deep pixel embedding

BioImageAnalysisNotebooks

Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more

build-your-own-x

Master programming by recreating your favorite technologies from scratch.

InvokeAI

InvokeAI is a leading creative engine for Stable Diffusion models, empowering professionals, artists, and enthusiasts to generate and create visual media using the latest AI-driven technologies. The solution offers an industry leading WebUI, supports terminal use through a CLI, and serves as the foundation for multiple commercial products.

VollSeg

Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Available via pip package vollseg.

dendritic-spine-counter

Online service for finding dendritic spines in microscope slide images

SpineAnalysis_public

Point2Skeleton

Point2Skeleton: Learning Skeletal Representations from Point Clouds (CVPR2021)

pycurv

Reliable estimation of membrane curvature for cryo-electron tomography

Pyto

Image processing of biological cryo-electron tomograms

3DCT

This Toolbox is build for 3D correlative microscopy. It helps with 3D to 2D correlation of three dimensional confocal image stacks to two dimensional SEM/FIB dual beam microscope images.

yimu-blog

napari-segment-blobs-and-things-with-membranes

A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.

focal-loss

TensorFlow implementation of focal loss

vmtk

the Vascular Modeling Toolkit

Braintown

SlicerNotebooks

Examples that illustrate how to use 3D Slicer via Jupyter notebooks in Python

K3D-jupyter

K3D lets you create 3D plots backed by WebGL with high-level API (surfaces, isosurfaces, voxels, mesh, cloud points, vtk objects, volume renderer, colormaps, etc). The primary aim of K3D-jupyter is to be easy for use as stand alone package like matplotlib, but also to allow interoperation with existing libraries as VTK.

convex_hull_3d

Incremental Convex Hull Algorithm and SAT Collision Detection for 3D Objects.

Augmentor

Image augmentation library in Python for machine learning.

Aini_Medic

A simple-to-use yet function-rich medical image processing toolbox

awesome-image-registration

image registration related books, papers, videos, and toolboxes

scikit-fmm

scikit-fmm is a Python extension module which implements the fast marching method.

morph-snakes

Morphological snakes for image segmentation and tracking