ModuleNotFoundError
mvfki opened this issue · comments
Yichen Wang commented
A ModuleNotFoundError raised for me when I was trying bbknn.bbknn(adata)
function, at ./bbknn/__init__.py
line 262, where you wrote
start = logg.info(...)
I know that this logg
came from line 10
from scanpy import logging as logg
Here you are using a "try/except" syntax, such that you are allowing the nonexistence of scanpy
. But in the core function (line 262) it seems still mandatory.
Simply installing scanpy
has already fixed it, I am just writing this down in case anyone else new to all these pipelines encounters a similar issue.
Krzysztof Polanski commented
Not a bug. bbknn.bbknn()
operates on an AnnData object, so having scanpy around seems logical. bbknn.bbknn_pca_matrix()
, on the other hand, does not use scanpy logging, and would work fine.