SynBioDex / pySBOL3

Native python implementation of SBOL 3.0 specification

SynBioDex/pySBOL3 Issues

'simple_library.nt' not present in the examples directory for it to be accessed by 'getting_started.ipynb' file
Updated 6 months ago2
pySHACL fails in Python 3.12 and windows-latest builds
Updated 9 months ago1
Update supported python versions
Closed 9 months ago
Visitor functions do not actually return values
Closed 9 months ago
Activity missing wasInformedBy property
Closed 9 months ago
Orientation values need to be updated
Updated a year ago1
Improve pylint compatibility
Updated a year ago
if the namespace of an object is changed it should be reflected in the object
Updated a year ago14
Write unit test for feature.py validate function
Closed a year ago2
Make Toplevel.copy() deprecation warning more informative
Closed a year ago4
Cannot extend `Location` as a `CustomIdentified`
Closed 2 years ago1
Macro for document create and read
Closed 2 years ago
PathLike for Document read/write
Closed 2 years ago
Eliminate empty lines in .nt serializations
Closed 2 years ago1
Problem with python-dateutil requirement
Updated a year ago2
Can `Location` be extended?
Updated a year ago1
fix typo in URL of SBOL data model specification
Closed a year ago
Improve readthedocs formatting
Updated a year ago3
Adding SHACL for validating extensions
Updated 2 years ago
Tutorial improvements
Updated 2 years ago
Adding an object to more than one parent Document
Updated 2 years ago3
Namespaces must not end with a slash
Updated 2 years ago
Error when setting identity for SubComponent
Updated 2 years ago4
Add guidelines for contributors
Updated 2 years ago
Actions builds for Windows and Mac are running on Ubuntu Linux
Closed 2 years ago
Windows writes SORTED_NTRIPLES with CRLF
Closed 2 years ago7
New copy method is far slower than old copy method
Updated 2 years ago
Accelerate loading
Closed 2 years ago2
Lookup failure exceptions
Updated 2 years ago2
Clean up ReferencedObject typing
Updated 2 years ago2
Safe construction of identities
Closed 2 years ago4
Detect / prevent namespaces from ending with slash
Closed 2 years ago11
ConfigOptions
Updated 2 years ago2
Issues with accessing CombinatorialDerivation value
Closed 2 years ago10
Combinatorial Derivation non-standard class init
Updated 2 years ago2
Structure Assembly
Updated 2 years ago2
Round trip of SBOLTestSuite/SBOL3/entity/model/model.jsonld adds trailing slash
Closed 3 years ago1
Validation error on references between child objects
Updated 3 years ago
JSONLD serialization includes bogus context
Closed 3 years ago1
TypeError: Expecting string, got <class 'NoneType'>
Closed 3 years ago1
doc.add does not work for lists when installed by pip install sbol3
Closed 3 years ago2
Validation treats missing TopLevel objects as errors
Closed 3 years ago5
Enhancement: Add docstring for constructor for Identified class
Closed 3 years ago1
Errors in the documentation
Closed 3 years ago2
Remove set_homespace and get_homespace
Closed 3 years ago
Namespace validation breaks on read when default namespace differs
Closed 3 years ago4
Make SBOL objects sortable
Closed 3 years ago3
Update to RDFLib 6.0.1
Closed 3 years ago1
Component.interfaces should not be plural
Closed 3 years ago
Interface constructor typing should be lists, not singletons
Closed 3 years ago