SynBioDex / SBOL-utilities

Command-line utilities and scripts for manipulating SBOL data

SynBioDex/SBOL-utilities Issues

Different examples.org URIs in SBOL2 and SBOL3
Updated 3 months ago1
Bump pySBOL2 once ReferencedObject::__init__ fix is included
Updated 3 months ago
SBOL 2-3 converter - Interaction (Priority 2)
Updated 3 months ago3
SBOL 2-3 converter - SequenceConstraint (Priority 2)
Updated 3 months ago
SBOL 2-3 converter - Cut (Priority 2)
Updated 4 months ago1
SBOL 2-3 converter - Participation (Priority 2)
Updated 4 months ago
SBOL 2-3 converter - Range (Priority 2)
Updated 4 months ago
Add venv to .gitignore
Closed 4 months ago
SBOL 2-3 converter - LocalSubComponent (Priority 2)
Updated 4 months ago
SBOL 2-3 converter - Constraint (Priority 2)
Updated 4 months ago
SBOL 2-3 converter - VariableComponent (Priority 2)
Updated 4 months ago
SBOL 2-3 converter - Component (Priority 2)
Updated 4 months ago
SBOL 2-3 converter - SequenceFeature (Priority 1)
Updated 4 months ago
SBOL 2-3 converter - CombinatorialDerivation (Priority 2)
Updated 4 months ago
SBOL 2-3 converter - Attachment (Priority 2)
Updated 4 months ago
SBOL 2-3 converter - VariableFeature (Priority 2)
Updated 4 months ago
SBOL 2-3 converter - SequenceAnnotation (Priority 1)
Updated 4 months ago
SBOL 2-3 converter - SubComponent (Priority 1)
Updated 4 months ago
GitHub Mac tests failing to install Node.js properly
Closed 4 months ago3
Pulls from forks fail due to secret not being shared
Updated 5 months ago5
Ensure all GenBank features are in term translation list
Updated 6 months ago4
Switch all usages of SBOL_INLINE and SBOL_REVERSE_COMPLEMENT to SO
Updated 6 months ago2
Convert2to3 error
Closed 9 months ago2
Unable to open temporary file in Windows
Closed 9 months ago2
Windows build is not running on Windows
Closed 9 months ago
Complexity score calculation tests fail on Windows
Updated 9 months ago
Store GenBank References's location information as SBOL3 properties
Closed 2 years ago1
TypeError: unhashable type: 'SeqFeature'
Closed a year ago1
Ignore SBOL objects that cannot be converted to Genbank
Closed 2 years ago1
Support all of the GenBank examples in test/test-files
Closed 2 years ago
Handle GenBank header lines in genbank converter
Closed 2 years ago
Direct GenBank converter doesn't include SubComponent features
Updated a year ago
Fuzzy locations break document validity
Updated a year ago6
Namespace defaults should use pySBOL3 defaulting rules
Updated a year ago2
todo: remove temporary workaround implemented for pySBOL3 bug once its fix is incorporated
Updated a year ago
Handle Strain Information
Updated 2 years ago
find_feature
Updated 2 years ago
converter to write only setted GenBank fields?
Updated 2 years ago2
sbol2 to sbol3 with Combinatorial Design
Updated 2 years ago1
Parse taxonomy in a better way by creating new top level object property
Updated 2 years ago
Support all of the sample files in the iGEM distribution
Updated 2 years ago
Modification needed for the new extended Component class to store extraneous GenBank properties
Updated 2 years ago
Introduce modes in which the converter can operate on based on consideration of non standard GenBank annotations
Updated 2 years ago
Refactor SBOL/Genbank converter to be more modular
Updated 2 years ago
Work on the GenBank files in SBOLTestSuite
Updated 2 years ago
Hardcoded values for various properties while converting from SBOL3 -> GenBank
Updated 2 years ago
Hardcoded values for various properties while converting from GenBank -> SBOL3
Updated 2 years ago
Store multiple feature locations in genbank converter
Updated 2 years ago
Include `SubComponents` in genbank converter
Updated 2 years ago
Remove the `write` argument to the sbol3 genbank converter
Updated 2 years ago