SuperXiang

AbNumber

Convenience Python APIs for antibody numbering using ANARCI

abyssal-pytorch

Implementation of Abyssal, a deep neural network trained with a new "mega" dataset to predict the impact of an amino acid variant on protein stability.

AttnPacker

Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"

BladeDISC

BladeDISC is an end-to-end DynamIc Shape Compiler project for machine learning workloads.

codealpaca

ContinualLM

An Extensible Continual Learning Framework Focused on Language Models (LMs)

data-preparation

Code used for sourcing and cleaning the BigScience ROOTS corpus

DIFFormer

The official implementation for ICLR23 spotlight paper "DIFFormer: Scalable (Graph) Transformers Induced by Energy Constrained Diffusion"

dl_binder_design

efficient-evolution

Efficient evolution from protein language models

EigenFold

EigenFold: Generative Protein Structure Prediction with Diffusion Models

GearNet

GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)

GPT-NER

mixture-of-experts

PyTorch Re-Implementation of "The Sparsely-Gated Mixture-of-Experts Layer" by Noam Shazeer et al. https://arxiv.org/abs/1701.06538

MULTICOM3

The software system of predicting protein tertiary and quaternary structures. It is prepared for CASP15 by BMLab.

OpenChatKit

OpenComplex

Trainable PyTorch framework for developing protein, RNA and complex models.

PaddleFleetX

Paddle Distributed Training Examples. 飞桨分布式训练示例 Resnet Bert GPT MOE DataParallel ModelParallel PipelineParallel HybridParallel AutoParallel Zero Sharding Recompute GradientMerge Offload AMP DGC LocalSGD Wide&Deep

PaddleHelix

Bio-Computing Platform featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集

RFdiffusion

Code for running RFdiffusion

RoseTTAFold2

RoseTTAFold2NA

RoseTTAFold2 protein/nucleic acid complex prediction

se3_diffusion

Implementation for SE(3) diffusion model with application to protein backbone generation

SecBERT

pretrained BERT model for cyber security text, learned CyberSecurity Knowledge

sk-iterative-planner

Iterative Planner for Semantic Kernel

SpeedPPI

Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning

therML

The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability

LLMPruner

mesh

Mesh TensorFlow: Model Parallelism Made Easier

MT-LLaMA

Multi-Task instruction-tuned LLaMA