Dr. Sultan Mia (Sultan-Mia)

Sultan-Mia

Geek Repo

Company:UWA

Location:WA, Australia

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Dr. Sultan Mia's repositories

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geocompr

Open source book: Geocomputation with R

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LongRead_tutorials

Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data

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abc-phenomics

Phenotypic analysis of 1119 apple accessions within the ABC.

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bioruby-polyploid-tools

Library and tools to deal with polyploid genomics

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bookdown-demo

A minimal book example using bookdown

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cider-vs-dessert

This repository contains data and scripts used to repoduce analyses in the manuscript "Quantifying the differences between cider and dessert apples".

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common_analyses

Repository of common bioinformatics scripts

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CV

My curriculum vitae.

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DSFAIR_Data-Science-for-Agriculture-in-R

:bar_chart::seedling: Data Science for Agriculture in R

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GPU-accelerated-guppy-basecalling

GPU-accelerated guppy basecalling and demultiplexing on Linux

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Guppy_Basecaller

GPU basecalling

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guppy_parameter_optimiser

A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate

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Intro-to-rnaseq-hpc-salmon-flipped

Introduction to bulk RNA-seq

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learning-resource-links

An awesome list of learning resources for bioinformatics, genomics and computational biology

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minimalmarkers

Code for choosing the minimal set of genetic markers needed to differentiate all samples in a genotyping dataset

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pb-human-wgs-workflow-snakemake

Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads

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PyBSASeq

A novel algorithm for BSA-Seq data analysis

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shell-genomics

Introduction to the Command Line for Genomics

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snphub

A Shiny-based server framework for retrieving, analyzing and visualizing the large genomic variations data in a lab.

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SOAPnuke

A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files

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