gianna-cling's starred repositories
connectomemapper3
Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
cnslab_fmri
CNS (Computational Neuroscience) Lab project for age/sex classification of fMRI scans
graph-network-explainability
Explainability techniques for Graph Networks, applied to a synthetic dataset and an organic chemistry task. Code for the workshop paper "Explainability Techniques for Graph Convolutional Networks" (ICML19)
ColeAnticevicNetPartition
Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)
ann4brains
Artificial neural networks for brain networks
Awesome-Graph-Neural-Networks
Paper Lists for Graph Neural Networks
Linking-CNN-GCN
Artery vein separation
SegLossOdyssey
A collection of loss functions for medical image segmentation
SegWithDistMap
How Distance Transform Maps Boost Segmentation CNNs: An Empirical Study
SciencePlots
Matplotlib styles for scientific plotting
ml-visuals
🎨 ML Visuals contains figures and templates which you can reuse and customize to improve your scientific writing.
3dbraingen
Official Pytorch Implementation of "Generation of 3D Brain MRI Using Auto-Encoding Generative Adversarial Network" (accepted by MICCAI 2019)
SOTA-MedSeg
SOTA medical image segmentation methods based on various challenges
Medical-Transformer
Official Pytorch Code for "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation" - MICCAI 2021
ModelsGenesis
[MICCAI 2019] [MEDIA 2020] Models Genesis
UNet-model-for-Segmentation
A transfer learning approach for segmenting images using U-Net model