SkyeC77

connectomemapper3

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

cnslab_fmri

CNS (Computational Neuroscience) Lab project for age/sex classification of fMRI scans

GraphGym

Platform for designing and evaluating Graph Neural Networks (GNN)

graph-network-explainability

Explainability techniques for Graph Networks, applied to a synthetic dataset and an organic chemistry task. Code for the workshop paper "Explainability Techniques for Graph Convolutional Networks" (ICML19)

GroupINN

GNN with summarization/grouping layer for speed and interpretability

NiMARE

Coordinate- and image-based meta-analysis in Python

ddCRP

Bayesian non-parametric algorithm for clustering data based on the Chinese Restaurant Process.

neuroparc

ColeAnticevicNetPartition

Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)

Visualising-Image-Classification-Models-and-Saliency-Maps

Ensemble3DCNN_connectomes

ann4brains

Artificial neural networks for brain networks

PRAGMA

Awesome-Graph-Neural-Networks

Paper Lists for Graph Neural Networks

Linking-CNN-GCN

Artery vein separation

SegLossOdyssey

A collection of loss functions for medical image segmentation

SegWithDistMap

How Distance Transform Maps Boost Segmentation CNNs: An Empirical Study

SciencePlots

Matplotlib styles for scientific plotting

ml-visuals

🎨 ML Visuals contains figures and templates which you can reuse and customize to improve your scientific writing.

ATLAS

A space to log issues, updates, and software related to the ATLAS (Anatomical Tracings of Lesions After Stroke) database.

mrirecon

ICON Lab @ Bilkent University

HiNet

Code for TMI 2020 "Hi-Net: Hybrid-fusion Network for Multi-modal MR Image Synthesis"

3dbraingen

Official Pytorch Implementation of "Generation of 3D Brain MRI Using Auto-Encoding Generative Adversarial Network" (accepted by MICCAI 2019)

medical-data

SSL4MIS

Semi Supervised Learning for Medical Image Segmentation, a collection of literature reviews and code implementations.

SOTA-MedSeg

SOTA medical image segmentation methods based on various challenges

Medical-Transformer

Official Pytorch Code for "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation" - MICCAI 2021

CCT

:page_facing_up: Semi-Supervised Semantic Segmentation with Cross-Consistency Training (CVPR 2020).

ModelsGenesis

[MICCAI 2019] [MEDIA 2020] Models Genesis

UNet-model-for-Segmentation

A transfer learning approach for segmenting images using U-Net model