ShannonDaddy's starred repositories
multiPrime
multiPrime is a mismatch-tolerant minimal primer set design tool for large and diverse sequences (e.g. Virus). Here is a web-based version (test: http://multiPrime.cn))
GMrepoProgrammableAccess
programmable access to GM repo
NanoBLASTer
Basic Local Alignment and Search Tool for Oxford Nanopore Long Sequences
NGTAS_pipeline
Computational pipeline to analyse Next Generation Targeted Amplicon Sequence data
IGV-snapshot-automator
Script to automatically create and run IGV snapshot batchscripts
dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow
dropSeqPipe
A SingleCell RNASeq pre-processing snakemake workflow
rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
single-cell-rna-seq
A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.