Sh1ne111

panqc

A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses

power_FDR

Power and false discovery rate

NovoGraph

NovoGraph: building whole genome graphs from long-read-based de novo assemblies

gwas_gemma

Perform GWAS with gemma in a simple pipeline

naive_seq_align

A simple sequence alignment

eQTL_XGBoost

appliedgenomics2023

Materials for EN.601.449/649 Computational Genomics: Applied Comparative Genomics

locusplotter

Visualization tool to plot composites at genomic loci, reference points & regions of interest

locusplotr

Create Regional Association Plots

CDKAM

container-collection-for-c

SWIGG

A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers

KaMRaT

g3tools

An R packages for Genomics, quantGen, and popGen studies, especially for crop species.

LinuxC

听说C与Linux更搭配哦～ 内容包括：C基础 C++面向对象编程 基础数据结构 linux系统编程以及一些操作系统的相关知识

ThreadPool

A simple C++11 Thread Pool implementation

prophex

ProPhex – an exact k-mer index using Burrows-Wheeler Transform

collapse

Advanced and Fast Data Transformation in R

os-minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

wgatools

Whole Genome Alignment Tools

pyseer

SEER, reimplemented in python 🐍🔮

ntSynt

Detecting multi-genome synteny using minimizer graph mapping

CropGBM

Cropgbm-genomebiology

Genomic-Prediction

R-Scripts for Genomic Prediction

GenomicPrediction

rrBLUP genomic prediction and K fold cross-validation

kmerDecoder

Extract kmers, skipmers, minimizers.

bio_tools

Useful bioinformatic scripts

DMAP

Davids Map Alignment Program for comparing genetic and physical maps

Genomic-Selection