SamGG

Samuel Granjeaud's starred repositories

report

:scroll: :tada: Automated reporting of objects in R

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pymde

Minimum-distortion embedding with PyTorch

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rstatix

Pipe-friendly Framework for Basic Statistical Tests in R

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checkmate

Fast and versatile argument checks

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iSEE

R/shiny interface for interactive visualization of data in SummarizedExperiment objects

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regl-scatterplot

Scalable WebGL-based scatter plot library build with Regl

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explor

Interfaces for Multivariate Analysis in R

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ctv-AnomalyDetection

CRAN Task View: Anomaly Detection with R 🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛍️🛒🛒

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ggplotify

ggplot everything

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topometry

Systematically learn and evaluate manifolds from high-dimensional data

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targets-shiny

Example Shiny app containing a targets pipeline.

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Spectre

A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.

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premessa

R package for pre-processing of mass and flow cytometry data

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sigclust2

tests for statistical significance of clustering

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MEM-examples

Marker Enrichment Modeling (MEM)

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scGBM

Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models

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TRACE

Interactive quality analysis for two-dimensional embeddings

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the-gap-statistic

An implementation of the gap statistic, a method for estimating the number of clusters in a set of data.

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CyTOF_analysis_Pipeline1

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CytoCluster

A package for clustering high-dimensional cytometry data in Python.

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applied-biostats

Applied Biostatistics Bookdown project. For Biology undergrads who've taken stats 101

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RcwlPipelines

A collection of pipeline recipes based on Rcwl.

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BCyto

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T-REX

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IMPRINTS.CETSA.app

Interactive shiny app for IMPRINTS.CETSA package, allowing you to analyze IMPRINTS CETSA data.

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fcs-validator

In-browser utility for validating FCS file specification compliance

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singleCellClassification

Single cell classification and feature engineering using DREMI scores

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cytofBrowser

Analysis and visualisation single-cell proteomic data (CyTOF)

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c060

c060 R package

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cytoBatchNorm

An R package to apply Batch Normalization to cytometry

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