SamGG

made4

made4_old

made4 package from Bioconductor

baySeq

clusterSeq

cytoElements

deploy_analyticyte

DIAgui

An interactive shiny app for processing DIA-nn output (filtering, MaxLFQ, Top3, iBAQ, etc.)

diffcyt

R package for differential discovery analyses in high-dimensional cytometry data

diffcyt_dev

flowCore

Core flow cytometry infrastructure

FlowSOM

Using self-organizing maps for visualization and interpretation of cytometry data

kohonen

Supervised and unsupervised self-organising maps

LAMBDA

An R package of model based clustering for flow and mass cytometry data

LP3_shiny

m2_bmrk

MSProfileR-test

ppsr

R implementation of Predictive Power Score

RANN

R package providing fast nearest neighbour search (wraps ANN library)

RAPID

Risk Assessment Population and Identification

rcpphnsw

Rcpp bindings for the approximate nearest neighbors library hnswlib

rgexf

Create, read and write GEXF (Graph Exchange XML Format) graph files (used in Gephi and others) in R.

riboSeqR

rigraph

igraph R package

Rtsne

R wrapper for Van der Maaten's Barnes-Hut implementation of t-Distributed Stochastic Neighbor Embedding

segmentSeq

Spectre

A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.

sva

T-REX

thoughts

What-I-cannot-create-I-do-not-understand

I fully agree with this quote from Richard Feynman. This precept has helped me better understand the limitations of many methods. Here are some of them.