Baqiao Liu's repositories
MAGUS
Graph Clustering Merger
ASTRID
Fast, accurate species tree estimation. This version has some Python3 bindings.
bioconda-recipes
Conda recipes for the bioconda channel.
scikit-learn
scikit-learn: machine learning in Python
ASTRAL
Accurate Species TRee ALgorithm
teeswift
TreeSwift, but for LuaJIT. This is heavily WIP.
arstid
Latest evolution of ASTRID, mainly for personal research use.
Constrained-search
Constrained search ASTRAL or simultaneous multi placement
phylogenomic_dataset_construction
This is a forked version of https://bitbucket.org/yanglab/phylogenomic_dataset_construction. This is for reproduction purposes only and not intended for general use.
njmerge
A tool for divide-and-conquer tree estimation via a shared distance matrix
TreeSwift
TreeSwift: Fast tree module for Python 3
A-pro
Forked version of ASTRAL-Pro that takes arbitrary constraints
DISCO
Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve orthologs and discard paralogs.
PhySigs
Phylogenetic inference of exposures of mutational signatures
ASTRID-aratame
ASTRID 改～あらため