Ruixuefennnian

CC_protein_origami

Design platform for creating single-chain polyhedral cages made from coiled-coil building modules

pykan

Kolmogorov Arnold Networks

nlp_course

YSDA course in Natural Language Processing

ipywidgets

Interactive Widgets for the Jupyter Notebook

pytorch-image-models

The largest collection of PyTorch image encoders / backbones. Including train, eval, inference, export scripts, and pretrained weights -- ResNet, ResNeXT, EfficientNet, NFNet, Vision Transformer (ViT), MobileNetV4, MobileNet-V3 & V2, RegNet, DPN, CSPNet, Swin Transformer, MaxViT, CoAtNet, ConvNeXt, and more

fastpages

An easy to use blogging platform, with enhanced support for Jupyter Notebooks.

fastai

The fastai deep learning library

fastbook

The fastai book, published as Jupyter Notebooks

ColabFold

Making Protein folding accessible to all!

alphafold-structural-space

Structural space exploration of AlphaFold DB

geometricus

A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.

kneed

Knee point detection in Python :chart_with_upwards_trend:

portein

2D portraits of 3D protein structures

bioinfo-toolbox

SPIN-CGNN

AttnPacker

Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"

ByProt

Oligomerization-State_and_Contact-Map

Pymol-script-repo

Collected scripts for Pymol

hoomd-blue

Molecular dynamics and Monte Carlo soft matter simulation on GPUs.

aa_stat

AA_stat tool is for searching uncovering the unexpected modifications of amino acid residues in the protein sequences, as well as possible artifacts of data acquisition or processing, in the results of proteome analyses.

Jerkwin.github.io

gromacs-tutorials

Some GROMACS tutorials using methane and water

pyemma-workshop

nonlinear-optimization

Nonlinear optimization solving with multiple Python libraries

CollagenTransformer

CollagenTransformer: End-to-End Transformer Model to Predict Thermal Stability of Collagen Triple Helices Using an NLP Approach

PAL_Generator

Get the color information from the screen and generate the PAL file

py4lifesci

Code repository for the book "Python for the Life Sciences" by Lancaster & Webster

introduction_to_ml_with_python

Notebooks and code for the book "Introduction to Machine Learning with Python"

ubiquitin-inputs