ruixli's repositories
sciColorMap
MATLAB colormaps for scientific data representation
affinewarp
An implementation of piecewise linear time warping for multi-dimensional time series alignment
allenCCF
Tools to work with Allen Inst CCF data in matlab
BrainSpace
BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |
CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
CaImAn-MATLAB
Complete Matlab pipeline for large scale calcium imaging data analysis
DeepAction
Toolbox for classification of animal behavior in video
DeepCAD-RT
DeepCAD-RT: Real-time denoising of fluorescence time-lapse imaging using deep self-supervised learning
export_fig
A MATLAB toolbox for exporting publication quality figures
facemap
Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.
faceMov
extract animal movement using svd decomposition
matlab-schemer
Apply and save color schemes in MATLAB with ease.
matlab_elastix
MATLAB Elastix wrapper
Mouse_WOI
Mouse wide-field optical imaging processing toolbox
NoRMCorre
Matlab routines for online non-rigid motion correction of calcium imaging data
npy-matlab
Experimental code to read/write NumPy .NPY files in MATLAB
nrrd-matlab
MATLAB code to read and write nrrd file
Pytorch-UNet
PyTorch implementation of the U-Net for image semantic segmentation with high quality images
rastermap
a visualization method for neural data
retinotopic_mapping
visual display and analysis python code for retinotopic mapping of rodent visual cortex
Starburst
Open source eye tracking algorithm
suite2p
cell detection in calcium imaging recordings
suite2p-matlab
Tools for processing 2P recordings
tif-matlab
A wrapper packge to read and write multi-page tif or tiff files with MATLAB.
wfield
Tools to process widefield data
WidefieldImager
Pre-processing pipeline for widefield data
yaml-matlab
MATLAB YAML parser and emitter based on SnakeYAML