Roth-Lab / pyclone

Probabilistic model for inferring clonal population structure from deep NGS sequencing.

https://bitbucket.org/aroth85/pyclone/wiki/Home

Roth-Lab/pyclone Issues

Pyclone Input
Updated a year ago
Reproducibility issue
Updated a year ago1
Reproducility issue
Updated 2 years ago
Preparing input files for pyclone from Varscan output snp files
Updated 2 years ago
ImportError: No module named cli
Updated 2 years ago1
Strange values for cellular prevalence and variant allele frequency>?
Updated 2 years ago1
ref_count and var_count input for Pyclone
Updated 2 years ago3
Should at least one mutation id overlap between any two of the input samples?
Updated 2 years ago
is tcltk necessary? can I run in non-interactive mode?
Closed 4 years ago2
major/minor copy number must be integer?
Closed 4 years ago2
how to use private somation mutation in pyclone?
Updated 4 years ago1
minor_cn equal to the major_cn
Updated 4 years ago
ValueError: gammavariate: alpha and beta must be > 0.0
Updated 4 years ago4
pyclone wiki is not available
Closed 4 years ago1
cannot cache function 'log_beta'
Updated 5 years ago5
How to classify subclone from PyClone result
Updated 5 years ago
Modify x label rotations in parallel_coordinates?
Updated 5 years ago
recommended inputs for whole exome sequencing data
Updated 5 years ago
Mutations in common not found across yamls
Updated 5 years ago3
--init_method connected not present
Closed 5 years ago2
Can Python3 use Pyclone?
Updated 6 years ago1
Fail to reproduce tutorial sample results in 2014 paper
Updated 6 years ago1
No pdfs under result/plots/loci
Updated 6 years ago
run testfile meet error
Updated 6 years ago
RuntimeError: Invalid DISPLAY variable
Closed 6 years ago2
Incorrect if statement
Updated 6 years ago