Beast code in Giters

Roth Lab's repositories

Probabilistic model for inferring clonal population structure from deep NGS sequencing.

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Fast method for inferring cancer clonal population structure from SNV data.

Language:PythonGPL-3.049 4 39

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Notes from the CONTRA cancer evolution workshop

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A spatially aware Bayesian clustering approach that allows for the incorporation of prior biological knowledge.

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A biologically informed evaluation of 2-D cell segmentation quality in multiplexed tissue images.

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Gating Flow Cytometry Data with Variational Bayes

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Pipeline for running Hierachical UMI model

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Automatically exported from code.google.com/p/joint-snv-mix

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Particle Gibbs Feature Allocation

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Software for inference of clonal genotypes using targeted single cell (nucleus) sequencing.

Language:PythonGPL-3.01 2 1

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Experiments for Particle Gibbs Feature Allocation paper

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Accurate Bayesian reconstruction of cancer phylogenies from bulk sequencing.

Language:PythonGPL-3.0000

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