RosettaCommons PyRosetta.notebooks Issues

RosettaCommons/PyRosetta.notebooks Issues

class RNA_DeNovoProtocolMover.de_novo_setup_from_command_line() or apply() can't run normally
Updated 4 months ago1
An error in GALigandDock: ERROR: error! pharmacophore docking requires reference_pool to be as 'INPUT'!
Updated 5 months ago
Inquiring regarding DNA model tutorial
Updated 5 months ago
Request to add tutorial for building cyclic peptides
Updated 7 months ago6
Segmentation fault when importing ESMFold and Tokenizers from transformers along with Pyrosetta
Updated 9 months ago
Why the mutation can not be executed thoroughly?
Updated a year ago2
How to deal with the error: Too many tries in fill_missing_atoms?
Closed a year ago1
ERROR/warning when read pdb files
Updated a year ago1
IndexError in Notebook 06.07 - Denovo Protein Design
Updated a year ago2
How can I convert protein torsional angles back to cartesian coordinates
Closed a year ago2
Preparing Protein, cutoff of 1.5 REU, convert the REU to kcal/mol?
Updated a year ago
How can I execute this command in pyrosetta?
Updated a year ago3
In tutorial Protein Geometry chapter angle is differ
Closed a year ago1
Running PyRosetta on Google Colab
Updated 2 years ago2
Unable to access the software, 401 unauthorized
Updated 2 years ago1
ModuleNotFoundError: No module named 'pyrosetta'
Closed 2 years ago1
add acetylated N-terminus using pyrosetta
Updated 2 years ago
I loaded the Python interpreter that deployed Pyrosetta Anaconda environment using PyCharm, but found many unresolved references while programming.
Closed 2 years ago1
how to set "-nstruct" ,if I want to output 5 fastrelax model?
Closed 2 years ago2
How to customize the scoring function?
Updated 3 years ago
Docking Protocols
Closed 3 years ago1
Access data of the movements performed and if they were rejected or no
Updated 3 years ago
please, give example of using snugdock from pyrosetta
Updated 3 years ago
Missing sections
Updated 3 years ago
Is there a way to solve the python version conflict between PyRosetta (Python 3.6) and Colab (Python 3.7)
Updated 4 years ago2
Light chain gene identity required in Notebook 12.02
Closed 4 years ago2
15.1 failing in master
Updated 4 years ago
XML in RS broken
Closed 4 years ago4
cdr_selector = CDRResidueSelector() SmallKeyVector.hh line: 548
Closed 4 years ago2
ModuleNotFoundError: No module named 'pyrosetta.distributed.utility.pickle'
Closed 4 years ago1
A problem about relax.apply(x) in Chapter 6.8
Closed 4 years ago
notebook15.04 rasie AttributeError: module 'pyrosetta.rosetta' has no attribute '__path__'
Closed 5 years ago12
Make readme.md more like a title page
Updated 5 years ago

RosettaCommons / PyRosetta.notebooks

RosettaCommons/PyRosetta.notebooks Issues

class RNA_DeNovoProtocolMover.de_novo_setup_from_command_line() or apply() can't run normally

An error in GALigandDock: ERROR: error! pharmacophore docking requires reference_pool to be as 'INPUT'!

Inquiring regarding DNA model tutorial

Request to add tutorial for building cyclic peptides

Segmentation fault when importing ESMFold and Tokenizers from transformers along with Pyrosetta

Why the mutation can not be executed thoroughly?

How to deal with the error: Too many tries in fill_missing_atoms?

ERROR/warning when read pdb files

IndexError in Notebook 06.07 - Denovo Protein Design

How can I convert protein torsional angles back to cartesian coordinates

Preparing Protein, cutoff of 1.5 REU, convert the REU to kcal/mol?

How can I execute this command in pyrosetta?

In tutorial Protein Geometry chapter angle is differ

Running PyRosetta on Google Colab

Unable to access the software, 401 unauthorized

ModuleNotFoundError: No module named 'pyrosetta'

add acetylated N-terminus using pyrosetta

I loaded the Python interpreter that deployed Pyrosetta Anaconda environment using PyCharm, but found many unresolved references while programming.

how to set "-nstruct" ,if I want to output 5 fastrelax model?

How to customize the scoring function?

Docking Protocols

Access data of the movements performed and if they were rejected or no

please, give example of using snugdock from pyrosetta

Missing sections

Is there a way to solve the python version conflict between PyRosetta (Python 3.6) and Colab (Python 3.7)

Light chain gene identity required in Notebook 12.02

15.1 failing in master

XML in RS broken

cdr_selector = CDRResidueSelector() SmallKeyVector.hh line: 548

ModuleNotFoundError: No module named 'pyrosetta.distributed.utility.pickle'

A problem about relax.apply(x) in Chapter 6.8

notebook15.04 rasie AttributeError: module 'pyrosetta.rosetta' has no attribute 'path'

Make readme.md more like a title page