Ralf Gabriels's repositories
2023-EuBIC-MS-proc
Proceedings EuBIC-MS dev meeting 2023
mzspeclib-py
A python reference implementation of the mzSpecLib spectral library format
pyteomics
Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis.
sage
Proteomics search & quantification so fast that it feels like magic
OpenMS
The codebase of the OpenMS project
rustyms
A rust library for parsing ProForma peptides and matching them against MS spectra
ralfg.github.io
Hugo Academic website
mokapot
Fast and flexible semi-supervised learning for peptide detection in Python
convert-config-hook
Pre-commit hook to convert JSON/TOML/YAML files
schemastore
A collection of JSON schema files including full API
ionmob
An open-source prediction framework for peptide ion collision cross section (CCS) values with python.
jsonschema2md
Convert JSON Schemas to simple, human-readable Markdown documentation. Repo archived in favor of fork: sbrunner/jsonschema2md2
spectrum_utils
Python package for efficient MS/MS spectrum processing and visualization
cascade-config
Cascading Python configuration from the CLI and config files
python-wheels-manylinux-build
GitHub Action to build Python manylinux wheels
proxi-schemas
ProXI: Schema definitions for the Proteomics eXpression Interface
hello_py
Dummy Cython project
execnb
Execute a jupyter notebook, fast, without needing jupyter
quarto-cli
Open-source scientific and technical publishing system built on Pandoc.
psims
A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML
2022-listeria-spectrum-similarity
Code and results for similarity calculation between endogenous and synthetic Listeria peptide spectra.
pyAscore
A python module for fast post translational modification localization, powered by Cython.
streamlit-scripts
Miscellaneous Streamlit scripts
usi
Universal Spectrum Identifier for Mass Spectrometry
psi-mod-CV
Reactivated PSI-MOD ontology for molecular mass modifications