Ralf Gabriels's repositories
python-wheels-manylinux-build
GitHub Action to build Python manylinux wheels
jsonschema2md
Convert JSON Schemas to simple, human-readable Markdown documentation. Repo archived in favor of fork: sbrunner/jsonschema2md2
cascade-config
Cascading Python configuration from the CLI and config files
2022-listeria-spectrum-similarity
Code and results for similarity calculation between endogenous and synthetic Listeria peptide spectra.
convert-config-hook
Pre-commit hook to convert JSON/TOML/YAML files
execnb
Execute a jupyter notebook, fast, without needing jupyter
hello_py
Dummy Cython project
ionmob
An open-source prediction framework for peptide ion collision cross section (CCS) values with python.
mokapot
Fast and flexible semi-supervised learning for peptide detection in Python
mzspeclib-py
A python reference implementation of the mzSpecLib spectral library format
OpenMS
The codebase of the OpenMS project
proxi-schemas
ProXI: Schema definitions for the Proteomics eXpression Interface
psi-mod-CV
Reactivated PSI-MOD ontology for molecular mass modifications
psims
A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML
pyAscore
A python module for fast post translational modification localization, powered by Cython.
pyteomics
Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis.
quarto-cli
Open-source scientific and technical publishing system built on Pandoc.
ralfg.github.io
Hugo Academic website
rustyms
A rust library for parsing ProForma peptides and matching them against MS spectra
sage
Proteomics search & quantification so fast that it feels like magic
schemastore
A collection of JSON schema files including full API
spectrum_utils
Python package for efficient MS/MS spectrum processing and visualization
streamlit-scripts
Miscellaneous Streamlit scripts
usi
Universal Spectrum Identifier for Mass Spectrometry
workflow_pxd_to_speclib
Snakemake workflow that reanalyzes proteomics data from a PRIDE Archive project to create a spectral library