RNAer

seqel

Emacs extension for biological sequences

caret_ml

classification/regression on microbiome data with R/caret package

micronota

annotation pipeline for microbial genomes and metagenomes

org-blog

Publish blog with org-mode and Hexo or Jekyll

assembly_snakemake_pipeline

Workflow for the assembly benchmark against TSLR

awesome-machine-learning

A curated list of awesome Machine Learning frameworks, libraries and software.

bioconda-recipes

Conda recipes for the bioconda channel.

calour

exploratory and interactive microbiome analyses based on heatmaps

conda-recipes

conda recipes for bioinformatic tools like blast+, infernal, etc.

cookiecutter-data-science

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

docs-travis-ci-com

The Travis CI Documentation

dumpling

Application Wrapper

gene-coverage

Report largest fraction of coverage.

gptel

A simple LLM client for Emacs

IGGdb

Database of genomes integrated from the gut microbiome and other environments

melpa

Recipes and build machinery for the biggest Emacs package repo

notes-python

中文 Python 笔记

oecophylla

shotgun pipeline

org-reveal

Exports Org-mode contents to Reveal.js HTML presentation.

pipeline_lite

Generates scripts to run a basic sequencing pipeline.

plugin-demo

a demo to show how to write plugins with setuptools

python-recipes

useful python recipes

scikit-bio

Core objects, functions and statistics for working with biological data in Python.

scikit-bio-feedstock

A conda-smithy repository for scikit-bio.

scikit-bio-rfcs

Request For Comments (RFCs) for scikit-bio.

sequence-benchmarks

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

streaz

tempel-collection

Collection tempel templates

transpose-frame

Transpose windows arrangement in a frame