Guangyao Qi's repositories
acme
A library of reinforcement learning components and agents
Cascade
Calibrated inference of spiking from calcium ΔF/F data using deep networks
causal-decomposition-analysis
Causal decomposition analysis
causal_inference_python_code
Python code for part 2 of the book Causal Inference: What If, by Miguel Hernán and James Robins
ccnlab
Benchmarks for computational cognitive neuroscience tasks
COIN
The COntextual INference (COIN) model
cosyne-tutorial-2022
Cosyne workshop tutorial 2022
DLAG
A dimensionality reduction framework for disentangling the flow of signals between populations of neurons
ecog-component-model
Component model used to analyze auditory ECoG data
facemap
Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.
fast-marl
FAST iteration of MARL research ideas: A starting point for Multi-Agent Reinforcement Learning
glm-hmm
Code to reproduce figures for "Mice alternate between discrete strategies during perceptual decision-making" from Ashwood, Roy, Stone, IBL, Churchland, Pouget and Pillow (2021)
glmhmm-1
code to fit GLMs, HMMs, and GLM-HMMs (aka IO-HMMs)
neuropixels-pxi
Open Ephys GUI plugin for interfacing with PXIe-based Neuropixels hardware
pingouin
Statistical package in Python based on Pandas
projInference
This is the code of our Neuron 2018 paper: A switching observer for human perceptual estimation. We used perceptual estimation experiments to probe and model whether/how human subjects use statistical priors to adapt perceptual judgements.
pyGLMHMM
A Python implementation of GLM-HMM (port of https://github.com/murthylab/GLMHMM)
pyprobml
Python code for "Probabilistic Machine learning" book by Kevin Murphy
ssm
Bayesian learning and inference for state space models
stringer-pachitariu-et-al-2018a
Recordings of 10k neurons during spontaneous behaviors
unsup_vvs
Unsupervised deep convolutional neural network model for the ventral visual stream.