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Qianqian Song (QSong-github)

QSong-github

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Company:University of Florida

Location:FL, USA

Home Page:https://hobi.med.ufl.edu/profile/song-qianqian/

Twitter:@Sophie_QSong

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Qianqian Song's repositories

scGCN

scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics

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SiGra

Single-cell spatial elucidation through image-augmented graph transformer

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SMGR

SMGR: a joint statistical method for integrative analysis of single-cell multi-omics data

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HGGEP

Gene Expression Prediction from Histology Images via Hypergraph Neural Networks

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spaCI

Deciphering spatial cellular communications through adaptive graph model

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AntiFormer

Knowledge graph enhanced LLM for binding affinity prediction

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scLM

Automatic detection of consensus gene clusters across multiple single-cell datasets

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SpaIM

Single-cell Spatial Transcriptomics Imputation via Style Transfer

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DrugFormer

DrugFormer: graph-enhanced language model to predict drug sensitivity

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DSTG

Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence

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python-cheatsheet

Comprehensive Python Cheatsheet

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scPerb

scPerb: predict single-cell perturbation via style transfer-based variational autoencoder

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SongLab

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SpaRx

Elucidate spatial heterogeneity of drug sensitivity for personalized treatment

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BIMM

Uncovering the dynamic effects of DEX treatment on lung cancer by integrating bioinformatic inference and multiscale modeling of scRNA-seq and proteomics data

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brcarepred

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BrMet

Single cell sequencing reveals the landscape of the brain metastatic microenvironment

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CONICS

CONICS: COpy-Number analysis In single-Cell RNA-Sequencing

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labs

Rmd source files for the HarvardX series PH525x

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MachineLearning

Machine learning resources

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methylation-recipes

Scripts related to 450k and EPIC data analysis

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MIRACUM-Pipe

Whole exome sequencing pipeline including advanced variant annotation features and automated PDF reporting.

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nextgenseq_pipeline

Exome/Capture/RNASeq Pipeline Implementation using snakemake

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PRMLT

Matlab code for machine learning algorithms in book PRML

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RNA_MUTECT_1.0-1

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RNASEQ-Pipeline

Description of the different step in Pipeline RNAseq Single End. From fastq to count tables.

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scCCA

scCCA: Leveraging multiple single cell datasets through CCA algorithm

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SCeQTL

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SPN

SPN: biological mechanism in breast cancer with different proliferation levels

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xSiGra

Explainable model for single-cell spatial data elucidation

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