PeteHaitch

postcards

💌 Create simple, beautiful personal websites and landing pages using only R Markdown.

miloR

R package implementation of Milo for testing for differential abundance in KNN graphs

Giotto

Spatial omics analysis toolbox

mkl4deb

Adding the Intel MKL to a Debian / Ubuntu system via one simple script

cpp11

cpp11 helps you to interact with R objects using C++ code.

cicerone

🏛️ Give tours of your Shiny apps

alevin-fry

🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

souporcell

Clustering scRNAseq by genotypes

fitzRoy

A set of functions to easily access AFL data

cellsnp-lite

Efficient genotyping bi-allelic SNPs on single cells

city-script

Collection of scripts that can be loaded into city-roads

grkstyle

A Tidy R Code Style

st_pipeline

ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.

GeneTonic

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

MonashEBSTemplates

Rmarkdown templates for use at Monash University Department of Econometrics and Business Statistics

dsb

Normalize CITEseq Data

SpatialExperiment

too-many-cells

Cluster single cells and analyze cell clade relationships with colorful visualizations.

culburra

Artistic town street map made with Open Street Map data and ggplot2

PseudotimeDE

A robust DE test method that accounts for the uncertainty in pseudotime inference

ideal

Interactive Differential Expression AnaLysis - DE made accessible and reproducible

distilltools

A collection of tools to support the creation and styling of content on {distill} websites

FastPG

Fast phenograph, CyTOF

treeclimbR

lazyarray

Dev repository for R package lazyarray: A lightning tool to lazy load Giga-Byte-level data into memory

SpotClean

R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data

TileDBArray

Clone of the Bioconductor repository for the TileDBArray package.

making_bioconductor_pkg

milton-contrib

Useful scripts and other files for the WEHI HPC

appendCB

Append a character to the CB tag of each read record in the provided BAM file.