Peter Rupprecht's repositories
Spikefinder-Elephant
Keras network for spike detection from calcium traces
Instrument-Control
Instrument Control for Microscopes and Accessories
Drawing-ROIs-without-GUI
Drawing ROIs with a non-graphical user interface
Calcium_imaging_and_temporal_dispersion
Analysis of temporal dispersion from calcium imaging data processed with a spike inference algorithm
Hodgkin-Huxley-CC-VC
The Hodgkin-Huxley neuron model, simulated both in current clamp and voltage clamp
Ephys-data-analysis
Some scripts for electrophysiological data analysis (mainly Matlab)
Matlab-Library-2016
Matlab Ca imaging data analysis library 2016
Photon-yield-and-pulse-dispersion
Pulse dispersion, dielectric mirrors and fluorescence yield
remote-z-scanning-ABCD-optics
ABCD optics analysis for remote z-scanning using Mathematica
Spikefinder-Adaptive-Derivative
A simple model-based algorithm for the spikefinder competition
Understanding-style-transfer
Using a pre-trained GoogLeNet and the Deep Dream technique to analyze Gram matrices
A-lens-to-undistort-sinusoidal-scan-trajectories
A lens to undistort sinusoidal scan trajectories
Basis-of-Feature-Spaces
Extracting and analyzing activations of the Inception network
Calculate-z-range-with-remote-ETL
Calculate the z-range using a remote ETL
CascadeFork
[Experimental fork] Calibrated inference of spiking from calcium ΔF/F data using deep networks
Cell_Detection
Python code for merging and refinement of detected neurons in large 3D stacks
DLC-inferencespeed-benchmark
A database of inference speed benchmark results on various platforms and architectures
LuigsAndNeumannSM5
A python class for communicating with the Luigs & Neumann SM-5 control box.
MatlabDAQmx
DAQmx Examples using MATLAB
spikefinder_analysis
Analysis code for the results of the spikefinder challenge