PDBe EMBL-EBI

ner_for_protein_structures

protein-cluster-conformers

Clusters protein chains based on CA distance difference

heatmap-component

Canvas-based Interactive Heatmap Component

pdbe-api-training

Interactive Python notebooks for PDBe API training

pdbe-notebooks

afdb-notebooks

ccdutils

A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dictionary, uses RDKit

arpeggio

Calculation of interatomic interactions in molecular structures

ccdc-hotspots

A knowledge-based method for determining small molecule binding "hotspots".

pdb-images

Generates images from mmCIF/BCIF files

protvista-pdb

PDB ProtVista Viewer

pdbe-api-specifications

pdbecif

A lightweight pure python package for reading, writing and manipulating mmCIF files distributed by the wwPDB"

pdb-topology-viewer

PDB Topology Viewer

pdb-sequence-viewer

PDB Sequence-feature Viewer

pdb-rna-viewer

The PDB RNA viewer depicts the secondary structure of a RNA in a 2D representation

pdb-redo

PDB_REDO

pdb-prints

ligand-env

Public repository of the PDBe ligand environment component

AFDB-Dictionary

AlphaFold Protein Structure Database Dictionary

pdbe-aggregated-api-example

A Jupyter Notebook with an example use case for the PDBe Aggregated API

exp-pages

Angular2 and Polymer components to display experimental information for a PDB entry

pdb-raw-exp-data

Polymer component displaying related raw experimental data when available

api-webinars

Study materials for the PDBe API webinar series in September 2020.

pdb-3d-complex

Summary web-component for the PDB 3D complex, a server that analyses the complexes in crystal structures

pdb-residue-interactions

Residue contacts viewer in Protein Contacts Atlas

pdb-lite-mol

Web-component implementation of LiteMol 3D structure viewer.

pdb-links

PDBe_Programming

PDBe Programming Interfaces information

LiteMol

A library/plugin for handling 3D structural molecular data (not only) in the browser.