PDBeurope

arpeggio

Calculation of interatomic interactions in molecular structures

pdbe-api-training

Interactive Python notebooks for PDBe API training

ccdutils

A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dictionary, uses RDKit

pdb-images

Generates images from mmCIF/BCIF files

pdbecif

A lightweight pure python package for reading, writing and manipulating mmCIF files distributed by the wwPDB"

PDBe_Programming

PDBe Programming Interfaces information

protein-cluster-conformers

Clusters protein chains based on CA distance difference

protvista-pdb

PDB ProtVista Viewer

pdb-lite-mol

Web-component implementation of LiteMol 3D structure viewer.

api-webinars

Study materials for the PDBe API webinar series in September 2020.

pdb-topology-viewer

PDB Topology Viewer

pdb-3d-complex

Summary web-component for the PDB 3D complex, a server that analyses the complexes in crystal structures

pdb-rna-viewer

The PDB RNA viewer depicts the secondary structure of a RNA in a 2D representation

pdb-sequence-viewer

PDB Sequence-feature Viewer

AFDB-Dictionary

AlphaFold Protein Structure Database Dictionary

ligand-env

Public repository of the PDBe ligand environment component

LiteMol

A library/plugin for handling 3D structural molecular data (not only) in the browser.

ner_for_protein_structures

pdb-residue-interactions

Residue contacts viewer in Protein Contacts Atlas

pdbe-aggregated-api-example

A Jupyter Notebook with an example use case for the PDBe Aggregated API

afdb-notebooks

Bio-HMM-Logo

Bio::HMM::Logo - Build logo graphics from HMM files

exp-pages

Angular2 and Polymer components to display experimental information for a PDB entry

heatmap-component

Canvas-based Interactive Heatmap Component

pdb-links

pdb-prints

pdb-raw-exp-data

Polymer component displaying related raw experimental data when available

pdb-redo

PDB_REDO

pdbe-api-specifications

pdbe-notebooks