OpenGene / dedup

Deduplication for cfDNA sequencing data

dedup

A small script for NGS data deduplication, optimized for cfDNA sequencing data

Dependency

This script depends on pysam module, please install it by pip or easy_install first

Usage

./dedup.py -1 in.sorted.bam -o out.bam > dedup.log

Be sure that the in.sorted.bam is sorted