OmicsML

awesome-deep-learning-single-cell-papers

dance

DANCE: a deep learning library and benchmark platform for single-cell analysis

awesome-foundation-model-single-cell-papers

CellPLM

Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.

SpatialCTD

A large scale atlas coming with Graph Neural Network solution for spatial cell type deconvolution

awesome-molecule-protein-pretrain-papers

awesome-bio-chatgpt

scDiff

scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models

scMoFormer

Single-Cell Multimodal Prediction via Transformer

Mem-GAN

A generative model for pseudo membrane generation of single-cell imaging in fluorescent microscopy

dance-tutorials

focus

awesome-agents-biology-papers

dance_auto_preprocess

scLLMBench

scLLMBench: A fexible framework for accelerating single-cell foundation model benchmarking

scMoMem