Oddant1

dev-docs

Developer documentation for QIIME 2

developing-with-qiime2

Developing with QIIME 2

docs

Source repository for https://docs.qiime2.org

galaxy-tools

Official QIIME 2 tools for Galaxy

library-svelte

Rewrite the QIIME 2 library in svelte and use the GitHub API

package-integration

q2-assembly

QIIME 2 plugin for (meta)genome assembly.

q2-boots

q2-composition

QIIME2 plugin for compositional data analysis

q2-cookiecutter

Template to help you create your new QIIME 2 plugin. 🚀

q2-demux

Map sequence barcodes to sample identifiers.

q2-diversity

q2-diversity-lib

q2-feature-classifier

QIIME 2 plugin supporting taxonomic classification

q2-feature-table

QIIME 2 plugin supporting operations on feature tables.

q2-longitudinal

QIIME 2 plugin for paired sample comparisons

q2-moshpit

MOdular SHotgun metagenome Pipelines with Integrated provenance Tracking

q2-phylogeny

Phylogenetic reconstruction, and operations on phylogenetic trees.

q2-stats

q2-types

Definitions of common QIIME 2 types.

q2-types-genomics

QIIME 2 types for genomics plugins.

q2-vizard

The first choice of wizard lizards for protection and entertainment

q2cli

Command line interface for QIIME 2

q2galaxy

Prototype interface for automatically generating Galaxy tools from QIIME 2 actions

q2view

Rewrite q2view in svelte

q2view-gallery

qiime2

Official repository for the QIIME 2 framework.

RESCRIPt

REference Sequence annotation and CuRatIon Pipeline

resources

A small site hosting our pre-trained classifiers so we don't need to rebuild the docs every time we have new ones.

sourcetracker2

SourceTracker2