ONERAI's repositories
CONCH
A vision-language foundation model for computational pathology - Nature Medicine
gReLU
gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
llama3-from-scratch
llama3 implementation one matrix multiplication at a time
llm-action
本项目旨在分享大模型相关技术原理以及实战经验。
llm-course
Course to get into Large Language Models (LLMs) with roadmaps and Colab notebooks.
LLM101n
LLM101n: Let's build a Storyteller
LLMs-from-scratch
Implementing a ChatGPT-like LLM in PyTorch from scratch, step by step
LucaOne
The LucaOne’s model code.
multiomics-open-research
BulkRNABert: Cancer prognosis from bulk RNA-seq based language models
nanoGPT
The simplest, fastest repository for training/finetuning medium-sized GPTs.
nicheformer
Repository for Nicheformer: a foundation model for single-cell and spatial omics
pertpy
Perturbation Analysis in the scverse ecosystem.
PINNACLE
Contextualizing protein representations using deep learning on protein networks and single-cell data
PRML_vagmcs
PRML notes, proofs and algorithms implemented in Python
spatial-lung-fibrosis
Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcriptomics data presented in our associated manuscript.
SwissArmyTransformer
SwissArmyTransformer is a flexible and powerful library to develop your own Transformer variants.
TransformerST
A Transformer Model Exploiting Histology Images and Spatial Gene Expression
udlbook
Understanding Deep Learning - Simon J.D. Prince
UNI
Towards a general-purpose foundation model for computational pathology - Nature Medicine