Nicolas-G-Biologeek

ImageJ_Export-LIF-as-Individual-Images

ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)

MIC-MAQ

MIC-MAQ for Microscopy Images of Cells - Multi Analyses and Quantifications is an ImageJ/Fiji Plugin for automatic segmentation of nuclei and/or cells for quantifications in other channels including foci detection

MiC

MiC is an ImageJ plugin to compare segmentation masks

Image-Analysis-Scripts

Various scripts written for image analysis utilities

BioImageAnalysisNotebooks

Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more

qupath

QuPath - Bioimage analysis & digital pathology

cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

IJ-Plugin_KymoToolBox

KymoToolBox is an ImageJ plugin dedicated to construction and analysis of kymographs

IJ-Plugin_KymoToolSet

IJ-Manual_Tracking

This ImageJ plugin is aimed at tracking simple object, in 2D and/or 3D.

IJ-Plugin_JACoP

Just Another Colocalisation Plugin

WholeSlideImageAnalysisWithQuPath

samapi

Segment Anything Model API

qupath-extension-cellpose

an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.