niralUser's repositories
NeuroRuler
A program that calculates head circumference from MRI data (.nii, .nii.gz, .nrrd).
DTIPlayground
An integrated framework for DWI Image QC and processing
SPHARM-PDM
Shape analysis has become of increasing interest to the medical community due to its potential to precisely locate morphological changes between healthy and pathological structures. SPHARM-PDM is a tool that computes point-based models using a parametric boundary description for the computing of Shape analysis.
ShapePopulationViewer
ShapePopulationViewer is a software that allows you to dynamically interact with multiple surfaces at the same time
3DMetricTools
3DMeshMetric is a visualization tool that computes and displays surface-to-surface distance between two triangle meshes using user-specified uniform sampling (based on the source code of MeshValmet: http://www.nitrc.org/projects/meshvalmet).
DTIPlaygroundLab
DTIPlayground Web UI Project
NeosegPipeline
This tool allows segmentin brain MRI using a multi-atlas based approach either via joint label fusion (ANTS) or via generating a subject-specific atlas.
MUMMI
MUlti-Modality Mri Imputation
DTIProcessToolkit
DTIProcess is a DTI processing and analysis toolkit developed in UNC and University of Utah
dcm_to_bids
Converts a dicom directory to bids format
BreezeStyleSheets
Breeze/BreezeDark-like Qt StyleSheets
GROUPS
Group wise registration for 3d-models
RigidAlignment
Rigid alignment of landmarks on the unit sphere
DTIAtlasBuilder
This tool creates an Atlas image as an average of several DTI images that will be registered
DTIPlaygroundNative
DTIPlayground Native
MIDLLatexTemplate
Latex template for the MIDL Conference
MeshValmet
MeshValmet is a tool that measures surface to surface distance between two triangle meshes using user-specified uniform sampling
SLCN_challenge_UNC
This repository contains the code used for the Surface Learning For Clinical Neuroscience
DTIPlaygroundTools
DTIPlayground required toolset build script
ReadImageHeader
Small tool to print (ITK) image header information. It can also be used to convert an image into a different format.
NormalizeDWIGradientVectors
This tool normalizes Diffusion Weighted Images (DWI) gradients.
ITKTransformTools
Tools allowing to perform basic operations on ITK transform files such as printing their content, concatenating them, inverting them, computing the smaller bounding box around a transformed image...
CurveCompare
Compares two fibers file with different metrics: euclidean distance (closest points), tangent metric, curvature metric, overlap, probabilistic overlap
CombineDWIs
Combine Diffusion Weighted Images (NRRD) with potentially different b-values
PolyDataCompression
Compress VTK or VTP files, allows to select the data type (binary, ASCII or appended), the level of compression (between 0 and 9, the difference however is barely noticeable) and enable the use of the wildcard (*) with SlicerExecutionModel.