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NBIS - National Bioinformatics Infrastructure Sweden (NBISweden)

NBIS - National Bioinformatics Infrastructure Sweden

NBISweden

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NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.

Location:Sweden

Home Page:https://nbis.se

Twitter:@NBISwe

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NBIS - National Bioinformatics Infrastructure Sweden's repositories

AGAT

Another Gtf/Gff Analysis Toolkit

Language:PerlLicense:GPL-3.0Stargazers:427Issues:46Issues:309

MrBayes

MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

Language:CLicense:GPL-3.0Stargazers:223Issues:48Issues:219

workshop-reproducible-research

NBIS/ELIXIR course: Tools for Reproducible Research

Language:HTMLLicense:CC-BY-4.0Stargazers:55Issues:41Issues:129

IgDiscover

Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

Language:PythonLicense:MITStargazers:17Issues:41Issues:111

workshop-epigenomics-RTDs

workshop website on readthedocs

Stargazers:15Issues:32Issues:0

workshop-mlbiostatistics

Language:HTMLStargazers:15Issues:36Issues:4

sda-cli

User command line interface for the SDA

Language:GoLicense:AGPL-3.0Stargazers:4Issues:10Issues:80

cytomine-bp-helm

Helm charts for deploying cytomine (https://doc.cytomine.org/) to a kubernetes environment.

Language:SmartyLicense:Apache-2.0Stargazers:2Issues:12Issues:0

sda-services-backup

Language:GoStargazers:2Issues:35Issues:26

confluence-server-to-cloud-utils

Various scripts used when migrating a Confluence Server instance to a Confluence Cloud instance.

Language:PythonStargazers:1Issues:7Issues:0

gc-bp-helm

Helm chart for grand challenge

Language:PythonStargazers:1Issues:6Issues:0

minute

MINUTE-ChIP data analysis workflow

Language:PythonLicense:MITStargazers:1Issues:37Issues:87

pgip

Population Genomics in Practice main website

Language:TeXLicense:GPL-3.0Stargazers:1Issues:8Issues:0

predictprotein-webserver-topcons2

web-server implementation for topcons2

Language:HTMLLicense:MITStargazers:1Issues:40Issues:38

theherdbook

The Herd Book

Language:TypeScriptLicense:AGPL-3.0Stargazers:1Issues:26Issues:233

workshop-kmer-analysis

Introduction into kmer analysis

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urdr

Timelogging system of NBIS

Language:TypeScriptLicense:AGPL-3.0Stargazers:0Issues:6Issues:333

cytomine-k8s-software-router

Kubernetes software router for cytomine kubernetes deployments

Language:PythonStargazers:0Issues:14Issues:0

datasets.bp.nbis.se

Demo website for Bigpicture dataset description pages.

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fega-sweden-helpdesk-acceptance-testing

Keeping track of acceptance testing done by FEGA Sweden's Helpdesk team

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fega-sweden-helpdesk-generate-files

A Snakelike workflow to generate unique FASTQ files

Language:PythonLicense:MITStargazers:0Issues:0Issues:0

gdi.nbis.se

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htsget-refserver

Reference server implementation for the GA4GH HTSget API standard.

Language:GoLicense:Apache-2.0Stargazers:0Issues:1Issues:1

htsget-rs

Rust htsget server

Language:RustLicense:MITStargazers:0Issues:0Issues:0

LTS-BiodiversityAnalysisCAO

Code repository for the support project P_Snoeijs-Leijonmalm_2205

Language:PythonLicense:MITStargazers:0Issues:7Issues:0

LTS-BuildGenomesDatabaseCAO

Download and build Bowtie2 indexes from animal genomes.

Language:PythonStargazers:0Issues:7Issues:0

predictprotein-webserver-boctopus2

Web-server for BOCTOPUS2 - a predictor for topology of transmembrane beta-barrel proteins

Language:PythonLicense:MITStargazers:0Issues:34Issues:2

predictprotein-webserver-scampi2

Web server for SCAMPI2

Language:HTMLLicense:MITStargazers:0Issues:35Issues:4

sda-uppmax-integration

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wabi-wiki-redirect

Example of how the wabi-wiki redirect is set up

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