MolGen

saliency

Framework-agnostic implementation for state-of-the-art saliency methods (XRAI, BlurIG, SmoothGrad, and more).

Recipes

Lasagne recipes: examples, IPython notebooks, ...

keras_frcnn

Keras Implementation of faster-rcnn

deep-learning-genomics-primer

Contains files for the deep learning in genomics primer.

protein-sequence-embedding-iclr2019

Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019

janggu

Deep learning infrastructure for genomics

lasagne4bio

biovec

A new approach for representing biological sequences

YAMDA

Yet Another Motif Discovery Algorithm

genomelake

Simple and efficient access to genomic data for deep learning models.

derfinder

Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches

FactorNet

A deep learning package for predicting TF binding

dsde-deep-learning

DSDE Deep Learning Club

AtomsOfDeepLearning

Simple Experiments to Give Some Intuition behind Deep Neural Networks

dimotif

Alignment-free Protein Motif Miner

AiGEM_TeamHeidelberg2017

The AiGEM software suite of Team Heidelberg 2017

DeepSF

Deep convolutional neural network for mapping protein sequences to folds

RBPnet