Mohmed Soudy's repositories
datasharing
The Leek group guide to data sharing
openPIP
The open protein interaction platform repo
Host-shiny-app-using-shiny-server
A stepby step guide on how to how to host shiny app using shiny-server and apache2
Bioinformatics-pipeline
Courses, tutorials and books that facilitate bioinformatics.
3D-Structre-Prediction
A Docker image to predict the 3D structures of given sequences in a FASTA file
ScRNAIMM
Performing single-cell imputation in a way that preserves the biological variations in the data. The package clusters the input data to do imputation for each cluster, and do a distribution check using the Anderson-Darling normality test to impute dropouts using mean or median (Yazici, B., & Yolacan, S. (2007) <doi:10.1080/10629360600678310>).
RepData_PeerAssessment1
Peer Assessment 1 for Reproducible Research
ggaligner
Visualizing Sequence Alignment by Generating Publication-Ready Plots
FPredX
This repository contains the FPredX models for the prediction of excitation maximum, emission maximum, brightness and oligomeric state of fluorescent proteins.
SCMcluster
SCMcluster is an ensemble clustering algorithm for single-cell RNA sequencing data.
joss-reviews
Reviews for the Journal of Open Source Software
FASTA-Cleaner
Clean input FASTA file that contains Amino acid sequences with rare Amino acids as 'X, U'
RCrashCourse_Book
A GitBook version of the R Crash Course self-tutorials: https://colauttilab.github.io/RCrashCourse
training-collection
Collection of bioinformatics training materials
datasets
TFDS is a collection of datasets ready to use with TensorFlow, Jax, ...
ddgun
predict stability change upon mutation
RNA-Seq-in-the-Cloud
An Easy to Use Analysis System for All Human Public bulk RNAseq Data!
ClusterDuck
Disease Clustering from Literature Based on Minimal Training Data
Intel-Scene-Classification
This repo for scene classification on Intel scenes derived from Kaggle challenge
SimpleGeneExpression
Programs to quantify expression of transcripts from public datasets
GeneCloudOmics
A Biostatistical tool for Transcriptomics Analysis
cs-video-courses
List of Computer Science courses with video lectures.
Onco-ProteoGenomics
Combining Multi-Omics for optimization and finding novel peptides in cancer diseases