MingchiXu

her2st

Her2 Breast Cancer Project

BASS

Bayesian Analytics for Spatial Segmentation

IRIS

Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics

csc570

CSC 570 Bioinformatics Fall 2011

pbj

R package to perform (semi)Parametric Bootstrap Joint ((s)PBJ) inference for neuroimaging data

SEraster

Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis

mit-deep-learning-book-pdf

MIT Deep Learning Book in PDF format (complete and parts) by Ian Goodfellow, Yoshua Bengio and Aaron Courville

SAFEclustering

SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data

SAN

Spatial autocorrelation normalization

PreferentialSampling

Geostatistical inference under preferential sampling

JointPRS

Yale-Notes

awesome-causality-algorithms

An index of algorithms for learning causality with data

BeyondMLR

Repo for January 2021 version of Beyond Multiple Linear Regression: Applied Generalized Linear Models and Multilevel Models in R. The rendered version can be found at: https://bookdown.org/roback/bookdown-BeyondMLR/

learning_research

本人的科研经验

MERINGUE

characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities

STalign

Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping

ctwas

package for the causal TWAS project

HumanPilot

Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project

paste

Probabilistic Alignment of Spatial Transcriptomics Experiments

CeLEry

CeLEry: cell location recovery in single-cell RNA sequencing

awesome-single-cell-foundation

Paper collection for single cell foundation models

inlabru

inlabru

scETM

A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.

splatter

Simple simulation of single-cell RNA sequencing data

insct

scRNAseq integration with triplet neural networks

minimal-light

A simple and elegant Jekyll theme for an academic personal homepage

trendsceek

Identify genes with spatial expression trends in single-cell gene expression data

USTC.Courses.Resource

:heart:**科学技术大学计算机学院课程资源(https://mbinary.xyz/ustc-cs/)

plain-academic

A truly simple website template for academics