Thomas A. Christensen II's repositories
chocolatey-packages
Chocolatey packages for software I like that weren't already there
act_docker_images
Docker images
BioAlignments.jl
Sequence alignment tools
bioconda-recipes
Conda recipes for the bioconda channel.
bioSyntax
Syntax highlighting for computational biology
cowcalf-rumen-metagenomic-pipeline
An end-to-end script to convert Illumina shotgun sequences and metadata into full-blown diversity tables and visualizations.
cowsay-cows
cowfiles in the original spirit of cowsay, except that all of these are actually bovine
docker-BioJulia
BioJulia in a Docker image
docker-names
A docker name generator in TypeScript.
HapLink.jl
Viral haplotype calling by linkage disequilibrium
logseq-awesome-links
⭐ Favicons for external links, page icons for internal. Logseq pluign
logseq-graph-analysis
learn more about the relationships between between your notes using network analysis algorithms
nf-configs
Config files used to define parameters specific to compute environments at different Institutions
nf-core_modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
nf-core_taxprofiler
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
nf-core_tools
Python package with helper tools for the nf-core community.
nfdocs-parser
A Sphinx plugin for converting Nextflow docstrings into documentation
SequenceVariation.jl
Biological sequence variation
v-met
A bare-bones, ridiculously simple metagenomics pipeline for viruses using Kraken 2 written in Nextflow.
XAM.jl
Parse and process SAM and BAM formatted files
yavsap
Yet Another Viral Subspecies Analysis Pipeline