MikeDMorgan

gwas_pipeline

Module and pipeline files for genome-wide association analysis

gwasenrichment_pipeline

Post-GWAS annotation enrichment testing

flow_pipeline

Analysis of flow cytometry data pipeline

Genomics

Processing, transformation and manipulation of common formats in computational genomics

proj036

Processin pipeline and analytical scripts for project036

scRNAseq

A pipeline for chaining together single cell RNA seq tasks

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

EmbryoTimecourse2018

Data and analysis scripts for our Embryo Timecourse paper.

FCGR_analysis_scripts

FCGR_paper_analysis_scripts

MikeDMorgan.github.io

Blog

BT5511-Workshop4

Code repository for BT5511 workshops

Human_eTAC2018

Analysis and plotting scripts for Human eTAC manuscript

LabRetreat2017

Test

MikeDMorgan_defunct.github.io

ProgrammingWorkshops

Code to store all my programming workshop materials

proj035

Project specific pipeline for project035

SingleCellClass

Single cell classification

SingleCellOpenProblems

Formalizing and benchmarking open problems in single-cell genomics

starfish

*fish -- a standardized analysis pipeline for image-based transcriptomics