Beast code in Giters

CGAT's repositories

UMI-tools

Tools for handling Unique Molecular Identifiers in NGS data sets

Language:PythonMIT478 36 489

cgat

Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps

Language:PythonBSD-3-Clause124 38 193

CGATPipelines

Collection of CGAT NGS Pipelines

Language:PythonMIT43 23 148

UMI-tools_pipelines

Pipelines for re-analysis of iCLIP and scRNA-Seq data for UMI-tools publication

Language:Jupyter Notebook10 7 3

dashboard

Dashboard to monitor projects and software development within the CGAT group (www.cgat.org)

Language:JavaScriptMIT4 80

DanQ_tensorflow

tensorflow adaptation of DanQ

Language:Jupyter Notebook2 6 2

proj029

Scripts for proj029

Language:PythonBSD-3-Clause2 240

python-hpc

Fork of the training material for the course: "Python for HPC" originally created by http://www.archer.ac.uk/ and adapted by http://www.arc.ox.ac.uk/

Language:Jupyter Notebook2 40

CGATTests

Test scripts and configuration for Jenkins CI testing of workflows

Language:PythonMIT1 220

scholar.py

A parser for Google Scholar, written in Python

Language:Python1 80

bioconda-recipes

Conda recipes for the bioconda channel.

Language:Shell040

CGATCore

Further development of the CGATCore has moved to a new repository. Please see

Language:PythonBSD-3-Clause022 1

CGATViewer

A script to display genomic data

Language:PythonNOASSERTION022 6

conda-recipes

build and test recipes for conda

Language:ShellNOASSERTION070

genserv-zope

Scripts for building the genserv web server

Language:PythonMIT040

Notebooks

ipython Notebooks

Language:Jupyter Notebook0220

Optic

Comparative genomics code for Optic, Gpipe and other projects.

Language:PythonMIT070

Pipeline_iCLIP

iCLIP analysis pipeline created for project 028

Language:Python05 1