Geoffrey Hannigan, PhD's repositories
Helpful_Lab_Materials
Easily write cover letters for submitting your academic manuscripts
Awesome-Bioinformatics-Books
A curated list of the best bioinformatics books, all in one place
OpenMetagenomeToolkit
Making Metagenomes Manageable
ViromeVarScripts
Evolutionary and Functional Implications of Hypervariable Loci Within the Skin Virome
Microbiology.github.io
Website
sportcolors
Color palettes from popular sports teams.
ASM-2017-Notes
Collection of notes from the 2017 American Society for Microbiology General Meeting
ConClustJL
Contig Clustering in Julia
FilterFasta
filter FASTA file based on sequence identifier and extract subsequences from start to end position
JuliaPerlBenchmark
A Basic Benchmark Comparison of Perl and Julia
aws-elastic-beanstalk-express-js-sample
Sample web application for the AWS DevOps Engineer Learning Path.
FellowshipsAndGrants
Helpful list of relevant fellowships and grants.
HowToCollaborate
A quick intro to collaborating on a manuscript with GitHub.
lab-notebook
My electronic lab notebook.
NihPostdocSalary
A simple visualization of the new postdoc salary model.
PhageHosts
The code used for identification of the hosts of different phages. This is the complete code base used in Edwards, McNair, Wellington-Oguri, and Dutilh, manuscript in preparation.
sam_equal_top_hit_filter
Filtering of the equal top best hits from a sam file
Schloss_rrnAnalysis_XXXX_2020
Code Club project analyzing utility of ASVs
schlosslab.github.io
The website for the Schloss Lab at the University of Michigan
serverdiff
Simple method for describing differences between directories.
uniprot_format_conversion
Scripts for converting Uniprot formats
ViromeKmerSpectrum
Playing around and benchmarking kmer spectra for viruses