Merck / deepbgc

BGC Detection and Classification Using Deep Learning

https://doi.org/10.1093/nar/gkz654

Merck/deepbgc Issues

ValueError: End location (8780) must be greater than or equal to start location (9428)
Updated 4 months ago
deepbgc info crash - same as Issue #39
Updated 5 months ago
ImportError: Missing required dependencies ['numpy']
Closed 5 months ago1
User Warning
Updated 5 months ago
DeepBGC failed with ValueError: missing molecule_type in annotations
Updated 6 months ago4
Missing required dependencies ['numpy'] with any version of deepbgc
Closed 2 years ago1
Looking for individual genes
Updated 8 months ago
Use https instead of ftp protocol for Pfam database download
Closed 8 months ago1
Visualization
Updated a year ago1
running "deepbgc info" issue
Updated a year ago
Bugs for protein input
Updated a year ago1
Installing deepBGC
Updated a year ago8
Hmmer and Prodigal Package Access Problem
Updated a year ago
Could deepBGC be used for special gene clusters?
Updated a year ago
what "inhibitor" means???
Updated a year ago
fit_generator
Updated a year ago
how to create negative samples?
Updated 2 years ago1
installation error
Closed 2 years ago1
how to get a cluster?
Updated 2 years ago
WARNING: Tensor flow backened message when running deepbgc info into the CLI
Updated 2 years ago1
run Deepbgc in fungal genomes
Closed 2 years ago1
bug in get_proteins_by_id affecting pfam annotator
Updated 2 years ago4
Installation Failure
Closed 2 years ago5
DeepBGC failed with KeyError: pfam_id
Closed 3 years ago6
Where I can get the code of e-deepBGC?
Closed 2 years ago1
Error during detector training
Updated 2 years ago5
How to get antismash and deebgc cobined svg?
Updated 2 years ago
I am getting an issue regarding memory, how to solve this ?
Updated 2 years ago
deepbgc pipeline does not seem to use more than 2 cores?
Updated 2 years ago2
deepbgc output result tsv file
Closed 3 years ago1
leave-class out validation
Closed 3 years ago1
deepbgc download error
Closed 3 years ago
Retrain on MIBiG 2.0
Updated 3 years ago11
Deepbgc installation through conda
Updated 3 years ago5
gbff GenBank file format is not recognised
Closed 3 years ago2
Automatically re-annotate PFAM domains if they are incompatible
Updated 3 years ago3
Fails with deepbgc. ImportError: cannot import name 'ChainMap'
Closed 3 years ago5
Installing 0.1.26 with Anaconda
Updated 3 years ago2
DeepBGC failed with Exception: Unexpected error detecting protein domains using HMMER hmmscan
Closed 3 years ago2
different number of elements in *.bgc.tsv rows
Closed 3 years ago2
ERROR: Could not find a version that satisfies the requirement tensorflow<2.0.0,>=1.15.4 (from deepbgc)
Closed 3 years ago3
Problem for training DeepBGC from scratch
Updated 3 years ago6
How to use DeepBGC's results to the antiSMASH
Closed 3 years ago14
No module named 'sklearn.ensemble.forest'
Closed 3 years ago1
using deepBGC with metagenomes
Updated 4 years ago9
MD5SUM is not match
Closed 4 years ago3
Is there other way to download data set?[speed restriction]
Closed 4 years ago5
Test run not working
Closed 4 years ago3
TensorFlow version problem
Closed 4 years ago2
Replace hmmscan with hmmsearch?
Closed 4 years ago5