Marten Chaillet's repositories
micrograph-modeller
Simulation of electron microscopy tilt- and frame-series, focused on modelling whole samples
effect-mblogit
Calculate confidence intervals around mblogit predictions
ribosome-membrane-orientation
Analysis of cryo-ET tomograms where ribosome orientations are plotted with respect to membrane segmentations.
a-trous-wavelet-3d
3D wavelet decomposition in python
aoc2021
learning rust with aoc2021
blik
Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.
cryocare-from-movies
Automatically processes data from a folder with raw tifs and mdocs to cryocare denoised tomograms.
cryoCARE_pip
PIP package of cryoCARE
libtilt
Image processing for cryo-electron microscopy in PyTorch
polysome-stats
Library of functions for polysome analysis with example jupyter notebooks
PyTom
PyTom software for cryo-tomogram processing
pytom-template-matching-gpu
Only GPU template matching from the PyTOM toolbox
PyTomPrivate
Development repository
PyTomUnitTests
Repo for large data files
SBC-scripts
This repository keeps tracks of the internal scripts of the SBC group.
tomotools
Scripts to make cryo-electron tomography a bit easier
voko
Administration and automation for VOKO
voltools
CUDA-accelerated texture memory 3D affine transformations with numpy/cupy