MarcElosua

Marc Elosua Bayés's starred repositories

ML-Papers-Explained

Explanation to key concepts in ML

7313 153 8

FriendsDontLetFriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

Language:RMIT6439 114 7

PrimeKG

Precision Medicine Knowledge Graph (PrimeKG)

Language:Jupyter NotebookMIT424 13 17

spacexr

Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

Language:HTMLGPL-3.0310 10 201

ProjecTILs

Interpretation of cell states using reference single-cell maps

Language:RGPL-3.0250 9 89

tensorqtl

Ultrafast GPU-enabled QTL mapper

Language:PythonBSD-3-Clause162 14 153

infercnvpy

Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

Language:PythonBSD-3-Clause137 4 55

cellsnp-lite

Efficient genotyping bi-allelic SNPs on single cells

Language:CApache-2.0131 8 94

multinichenetr

MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

Language:HTMLGPL-3.0123 3 97

cellcharter

A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.

Language:PythonBSD-3-Clause90 2 23

Monopogen

SNV calling from single cell sequencing

Language:HTMLGPL-3.082 3 82

ark-analysis

Integrated pipeline for multiplexed image analysis

Language:Jupyter NotebookMIT76 10 568

HLA_analyses_tutorial

A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying HLA alleles driving complex disease"

Language:Jupyter NotebookGPL-3.060 13 5