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MannLabs / CKG

Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph

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missing some files in cancerGenomeInterpreter

younis-bash opened this issue · comments

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Hi everyone

I think some files are missing in cancerGenomeInterpreter I checked the cancerGenomeInterpreterConfig.yaml it has 4 URL for the database
`cancerGenes_url: 'https://www.cancergenomeinterpreter.org/data/catalog_of_cancer_genes_latest.zip'
cancerVariants_url: 'https://www.cancergenomeinterpreter.org/data/catalog_of_validated_oncogenic_mutations_latest.zip'
cancerBioactivities_url: 'https://www.cancergenomeinterpreter.org/data/cancer_bioactivities_latest.zip'

cancerBiomarkers_url: 'https://www.cancergenomeinterpreter.org/data/cgi_biomarkers_latest.zip'
cancerBiomarkers_variant_file: 'cgi_biomarkers_per_variant.tsv'`
and when I checked the praser it used just cancerBiomarkers_url also there are expected 5 files generated from this parser and I got just 2 of them, can any one help me please?