Magnushhoie

esm

abodybuilder3

fiftyone

The open-source tool for building high-quality datasets and computer vision models

clop

MAGinator

MAGinator - Accurate SNV calling and profiling of MAGs

PenLight

news-feed-eradicator

A browser extension that deletes your news feed and replaces it with a nice quote

ImmuneBuilder

Predict the structure of immune receptor proteins

ScanNet

ProteinEvolutionToolbox

biotite

A comprehensive library for computational molecular biology

fuz

Fuz is a blazingly fast folder, file and text searcher

sh

A shell parser, formatter, and interpreter with bash support; includes shfmt

statannotations

add statistical significance annotations on seaborn plots. Further development of statannot, with bugfixes, new features, and a different API.

NetSurfP-3.0

NetSurfP 3.0: Protein secondary structure and relative solvent accessibility prediction

AbLang

AbLang: A language model for antibodies

pu-learning

Positive and unlabeled learning wrappers for scikit-learn

pu-learn

seqconverter

Command-line program for reading, writing, analyzing, and manipulating sequence files

alphafold_epitopes

PREDICTION OF EPITOPES USING ALPHAFOLD2 STRUCTURES AND GRAPH NEURAL NETWORKS

MLOps_sequences

dtu_mlops

Exercises and supplementary material for the machine learning operations course at DTU.

the-book-of-secret-knowledge

A collection of inspiring lists, manuals, cheatsheets, blogs, hacks, one-liners, cli/web tools and more.

k

CLI file system navigation. (Like z and/or autojump)

log4shell-vulnerable-app

Spring Boot web application vulnerable to Log4Shell (CVE-2021-44228).

02456-deep-learning-with-PyTorch

Exercises and supplementary material for the deep learning course 02456 using PyTorch.

deepbin

Improved metagenome binning using transformers

Biodatascience101_notebooks

Biological data-science Jupyter notebooks designed for biodatascience101.github.io

bi-tempered-loss-pytorch

Pytorch implementation of Robust Bi-Tempered Logistic Loss Based on Bregman Divergences

Machine-learning-for-proteins

Listing of papers about machine learning for proteins.