BIG-DE (BioInformatics and Genomics - Differential Expression) is an open source, Shiny-based application for exploring, visualizing, and analyzing gene expression data with minimal coding required. Users can use the application in their own RNA-seq or microarray expression data, and download the results. Built-in visualization tools include box plots, heatmaps and volcano plots. Please download the sample data (expression and pheno files) provided to test the application.
Access the application here or download R files and run locally
How to install the required packages before using the application?
source("https://bioconductor.org/biocLite.R")
biocLite("limma")
biocLite("preprocessCore")
install.packages("DT")
install.packages("ggplot2")
install.packages("gplots")
Main contributors: Tarun karthik kumar Mamidi, M.S.
Please report any issues or bugs to tmamidi@uab.edu