Song Feng (馮松)'s repositories
PPI_Synechococus_elongatus
The computational model of Synechococcus elongatus
AlphaFold3
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
d3flux
D3.js based visualizations of cobrapy metabolic models
DeepLearning
Deep Learning (Python, C, C++, Java, Scala, Go)
emll
some code for linlog model simulation
FBAhv
FBAhv: FBA analysis of host-virus metabolic model (read related publication at: https://www.life-science-alliance.org/content/4/1/e202000869)
HelixCode
Emulating Helix editing in VS Code.
HyperNetX
Python package for hypergraph analysis and visualization.
LaPreprint
📝 A nicely formatted LaTeX preprint template
MechAD
Python code for numerical simulations of self-assemly with optimization by automatic differentiation
ML-NLP
此项目是机器学习(Machine Learning)、深度学习(Deep Learning)、NLP面试中常考到的知识点和代码实现，也是作为一个算法工程师必会的理论基础知识。
NERDSS
NonEquilibrium Reaction-Diffusion Self-assembly Simulator
neuromancer
Pytorch-based framework for solving parametric constrained optimization problems, physics-informed system identification, and parametric model predictive control.
oxidizer
🛠️ Simple & Extensible Dotfile Manager using Rust Toolchains ⛓️
Pattrix
Automatic design of gene regulatory mechanisms for spatial pattern formation
Prochlorococcus_Model
Materials for Dynamic allocation of carbon storage and nutrient-dependent exudation in a revised genome-scale model of Prochlorococcus paper
pykan
Kolmogorov Arnold Networks
rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
SparseMacArthur
A package for infering the MacArthur's consumer-resource model
swarms
The Enterprise-Grade Production-Ready Multi-Agent Orchestration Framework Join our Community: https://discord.com/servers/agora-999382051935506503
The-Art-of-Linear-Algebra-zh-CN
Graphic notes on Gilbert Strang's "Linear Algebra for Everyone", 线性代数的艺术中文版, 欢迎PR.