LifeWorks

transformer-physx

Transformers for modeling physical systems

pytorch-deep-learning

Materials for the Learn PyTorch for Deep Learning: Zero to Mastery course.

BacterAI

pyciemss

Causal and probabilistic reasoning with continuous time dynamical systems

mamba.rs

simcoli

simcoli is a very simple cell simulator. Hopefully it will become more powerful overtime to

emll

vscode-helix

PanGEM

Pangenome-scale metabolic network reconstruction, analysis, and strain-model extraction

few-shot-leaf-segmentation

Supporting information for "Few-Shot Learning Enables Population-Scale Analysis of Leaf Traits in Populus trichocarpa"

BINNs

Biologically-informed neural networks

AlphaLink2

AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer

folding_tools

A collection of *fold* tools

zed

Code at the speed of thought – Zed is a high-performance, multiplayer code editor from the creators of Atom and Tree-sitter.

oxpilot

Your AI Copilot in Rust

PPIprophet

PPI prophet is a software tool for analysis of AP fractionated samples

ProchlorococcusGEM

quantms.io

The proteomics quantification format, extending mzTab for large scale datasets.

marksman

Write Markdown with code assist and intelligence in the comfort of your favourite editor.

mamba

evo

DNA foundation modeling from molecular to genome scale

2021-07-16-cell-factory-design

straindesign

StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy

CNApy

An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

pymCADRE

pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the network topology.

statannotations

add statistical significance annotations on seaborn plots. Further development of statannot, with bugfixes, new features, and a different API.

matlab2python

Simple matlab2python converter

grm-design

Automatic design of gene regulatory mechanisms for spatial pattern formation

genie

De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds

zellij

A terminal workspace with batteries included