Lifang He's repositories
BrainGNN_Pytorch
A preliminary implementation of BrainGNN
awesome-graph-explainability-papers
Papers about explainability of GNNs
AndysBrainBook
This repository contains the files that generate Andy's Brain Book on ReadTheDocs.
awesome-neural-ode
A collection of resources regarding the interplay between differential equations, deep learning, dynamical systems, control and numerical methods.
awesome-self-supervised-learning
A curated list of awesome self-supervised methods
BrainGB
Officially Accepted to IEEE Transactions on Medical Imaging (TMI, IF: 11.037) - Special Issue on Geometric Deep Learning in Medical Imaging.
brainiak-aperture
BrainIAK Aperture submission
cca_zoo
Canonical Correlation Analysis Model Zoo: Standard: CCA, GCCA, MCCA, TCCA, KCCA, TKCCA, sparse CCA , ridge CCA and elastic CCA, PMD, PLS. Deep: DCCA, DMCCA, DGCCA, DTCCA. DVCCA, DCCAE, SplitAE. Probabilistic: VBCCCA. With simulated data generation and toy datasets.
Change-Detection-Review
A review of change detection methods, including codes and open data sets for deep learning. From paper: change detection based on artificial intelligence: state-of-the-art and challenges.
covid19.MIScnn
Robust Chest CT Image Segmentation of COVID-19 Lung Infection based on limited data
cycle-diffusion
[ICCV 2023] A latent space for stochastic diffusion models
Dendritic-Non-Dendritic-Classification
This work consists of a comparative study between transfer learning and feature enginering techniques in classification of dendritic or non-dendritic microstructural morphologies.
effective_connectivity_toolbox
hese scripts aim at computing the effective connectivity by using functional and structural MRI data, as in A.Crimi et al. "Effective Brain Connectivity Through a Constrained Autoregressive Model" MICCAI 2016
GANs-for-Medical-Data
Code to run experiments generating synthetic time series medical data
generic-expression-patterns
Distinguishing between generic and experiment-specific gene expression signals.
graph-attribution
Codebase for Evaluating Attribution for Graph Neural Networks.
GVAED
Generalized Video Anomaly Event Detection: Systematic Taxonomy and Comparison of Deep Models
m3ae_public
Multimodal Masked Autoencoders (M3AE): A JAX/Flax Implementation
satellite-image-deep-learning
Resources for deep learning with satellite & aerial imagery
st_pipeline
ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
TransformerCVAE
Transformer-based Conditional Variational Autoencoder for Controllable Story Generation
voxelmorph
Unsupervised Learning for Image Registration